PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_33200_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 384aa    MW: 42399.8 Da    PI: 10.525
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_33200_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.31.9e-06116136526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+++++ G C+ G++CkF+H+
  Neem_33200_f_1 116 YCHHYLK-GRCQEGEKCKFSHD 136
                     5******.*************7 PP

2zf-CCCH21.83.3e-07170190525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++f + G+C++Gd C F+H
  Neem_33200_f_1 170 PCSNFVAKGFCNRGDDCLFSH 190
                     7******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.272111138IPR000571Zinc finger, CCCH-type
SMARTSM003560.0034112137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6112136IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4116136IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-4140166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.02168192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5169193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.131170193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4170191IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAIDADRYNF MPQAGRNKRK ASRDEVNIGS FSVCAENSKV HGEIVEQSAT QKQGITYKEK  60
QQDSGVCNKK KRSAPSKERK AKKKQKERKR RAEKNRQLGV KRLKLRPIVK PKTVTYCHHY  120
LKGRCQEGEK CKFSHDTVPL TKSTPCCHFA RKSCMKGDDC PFDHDLSKYP CSNFVAKGFC  180
NRGDDCLFSH KIPPKKDGSS SSSACLPQLK SPLLLHTLNS LKQPNVDQVS RQNAGVLSNN  240
GDVSSSKNVQ QNVAKPVLKP PALAPKGINC LFVGKSLVVE SSKLKQGSSS PKRNKSGKVA  300
NQTEQNASGT VQNMDETPKQ ILAAPKGVNF LSIGNSSLEN SSGKMVPNFH NQALPACMVR  360
KAMPKLETWQ PTVFQAQLKS QMIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16990KKRSAPSKERKAKKKQKERKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475477.11e-141PREDICTED: uncharacterized protein LOC102615714
TrEMBLV4UFB31e-141V4UFB3_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516